Cytonuclear Incompatibilities in Allopolyploids

Cytonuclear incompatibility and molecular evolution of organelle-targeted genes in allopolyploid plants. Maternal inheritance of cytoplasmic genomes results in a more recent shared evolutionary history with the maternal nuclear subgenome than with the paternal nuclear subgenome in allopolyploids. As such, maternally encoded genes targeted to organelles are expected to interact with cytoplasmic genomes in hybrids more successfully than paternally encoded genes. Preferential expression of maternal transcripts is predicted to prevent cytonuclear mismatch in the short term (A), while pseudogenization (denoted by Ψ symbol) of paternally inherited organelle-targeted genes and/or maternally biased gene conversion may evolve over longer timescales (B).

Cytonuclear Stoichiometry in the Wake of Genome Doubling

Potential mechanisms to maintain cytonuclear stoichiometry in polyploid plants. Gene dosage imbalance of cytonuclear genetics in the wake of a WGD event likely has important consequences for organismal function both in the immediate aftermath and as an evolved response to polyploidy. The elevated nuclear gene copy number resulting from polyploidization may require compensatory mechanisms to maintain coordinated gene expression between organelle-encoded and organelle-targeted genes. Some mechanisms that aid in maintaining cytonuclear stoichiometry may scale allometrically with ploidy level (e.g., cell size, organelle number, and organelle size), while others likely require regulatory control by the nuclear genome (e.g., cytoplasmic genome copy number and nuclear/cytoplasmic gene expression regulation).

Cytonuclear Interactions and Introgression

The direct and physical interactions between nuclear-encoded and cytoplasmically encoded gene products has important consequences for the outcomes of introgression, as mutations at certain sites may change the three-dimensional structure of the subunit, such that additional, compensatory changes are favored by selection to maintain biochemical function. Divergence between species at these epistatically interacting loci may reduce rates of introgression and reinforce species boundaries between species. This phenomenon may be, at least in part, responsible for Darwin's Corollary to Haldane's Rule (i.e., interspecific reciprocal crosses often differ in whether fertilization occurs and in the viability and fecundity of hybrids).

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