PUBLICATIONS

CV

† – Corresponding author; * – Supervised Graduate/Undergraduate Researcher; § – Supervised High School Intern

1. Sharbrough J^†, Bankers L, Cook EC^*, Fields PD, Jalinsky J, McElroy KE, Neiman M, Logsdon Jr. JM, Boore JL. 2023. Single-molecule Sequencing of an Animal Mitochondrial Genome Reveals Chloroplast-like Architecture and Repeat-mediated Recombination. Molecular Biology and Evolution. 40(1): msad007. DOI: https://doi.org/10.1093/molbev/msad007 PDF

2. Sharbrough J^†1, Conover JL¹, Fernandes Gyorfy M^*, Grover CE, Miller ER, Wendel JF, Sloan DB. 2022. Global patterns of subgenome evolution in organelle-targeted genes of six allotetraploid angiosperms. Molecular Biology and Evolution. 39(4): msac074. DOI: https://doi.org/10.1093/molbev/msac074 [1 – Authors contributed equally to this work.] PDF

3. Camus MF, Alexander-Lawrie B^*, Sharbrough J, Hurst GDD. 2022. Inheritance through the cytoplasm. Heredity^**. DOI: https://doi.org/10.1038/s41437-022-00540-2 [** – Published as part of the special issue celebrating the 200^th birthday of Gregor Mendel] PDF

4. Forsythe ES, Grover CE, Miller ER, Conover JL, Arick II MA, Chavarro MCF, Leal-Bertioli SCM, Peterson DG, Sharbrough J, Wendel JF, Sloan DB. Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204187119. DOI: https://doi.org/10.1073/pnas.2204187119 PDF See associated Editorial Commentary here

5. Grover CE, Forsythe ES, Sharbrough J, Miller ER, Conover JL, DeTar RA, Chavarro C, Arick MA, Peterson DG, Leal-Bertioli SC, Sloan DB, Wendel JF. 2022. Variation in cytonuclear expression accommodation among allopolyploid plants. Genetics. Genetics 222(2): iyac118. DOI: https://doi.org/10.1093/genetics/iyac118 PDF

6. Li L, Chen X, Fang D, Dong S, Guo X, Li N, Campos‐Dominguez L, Wang W, Liu Y, Lang X, Peng Y, Tian D, Thomas DC, Mu W, Liu M, Wu C, Yang T, Zhang S, Yang L, Yang J, Liu ZJ, Zhang L, Zhang X, Chen F, Jiao Y, Guo Y, Hughes M, Wang W, Liu X, Zhong C, Li A, Sahu SK, Yang H, Wu E, Sharbrough J, Lisby M, Liu X, Xu X, Soltis DE, Van de Peer Y, Kidner C, Zhang S, Liu H. Genomes shed light on the evolution of Begonia, a mega-diverse genus. New Phytologist. 234(1): 295-310. DOI: https://doi.org/10.1111/nph.17949 PDF

7. Grover CE, Arick MA, Thrash A, Sharbrough J, Hu G, Yuan D, Miller ER, Ramaraj T, Peterson DG, Udall JA, Wendel JF. Dual domestication, diversity, and differential introgression in Old World cotton diploids. Genome Biology and Evolution. 14(12):evac170. DOI: https://doi.org/10.1093/gbe/evac170 PDF

8. Eleven E^*, Esparza C^*, Abernathy A^*, Bradshaw A^*, Garcia M^*,Jobe N^*,Pyper K^*, Skaar C^*, Goncz K, Sharbrough J, DeVeaux LC. Genome Sequences of Gordonia rubripertincta Phages LilyPad and PokyPuppy. Microbial Resource Announcements. e00958-22. https://doi.org/10.1128/mra.00958-22 PDF

9. Fernandes Gyorfy M^*, Miller ER, Conover JL, Grover CE, Wendel JF, Sloan DB, Sharbrough J^†. Nuclear-cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number. The Plant Journal. 108: 219-230. DOI: https://doi.org/10.1111/tpj.15436 PDF

10. McElroy KE, Müller S, Lamatsch D, Bankers L, Fields PD, Jalinsky JR, Sharbrough J, Boore JL, Logsdon Jr. JM, Neiman M. 2021. Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution. 38(9): 3581-3592, DOI: https://doi.org/10.1093/molbev/msab121 PDF

11. Conover JL, Sharbrough J, Wendel JF. 2021. pSONIC: Ploidy-aware Syntenic Orthologous Networks Identified via Collinearity. G3: Genes | Genomes | Genetics. 11(8): jkab170. DOI: https://doi.org/10.1093/g3journal/jkab170 PDF

12. Hong Z, Liao X, Ye Y, Zhang N, Yang Z, Zhu W, Gao W, Sharbrough J, Tembrock LR, Xu D, Wu Z. A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers. BMC Genomics. 22: 1-13. DOI: https://doi.org/10.1186/s12864-021-07967-7 PDF

13. Ghiselli F, Gomes-dos-Santos A, Adema CM, Lopes-Lima M, Sharbrough J, Boore JL. 2021. Molluscan mitochondrial genomes break the rules. Philosophical Transactions of the Royal Society B, 376(1825), 20200159. DOI: https://doi.org/10.1098/rstb.2020.0159 PDF

14. Greimann ES^*, Ward SF, Woodell JD^*, Hennessey S^*, Kline MR^*, Moreno JA^*, Peters M^*, Cruise JL, Montooth KL, Neiman M, Sharbrough J^†. 2020. Phenotypic variation in mitochondria-related performance traits across New Zealand snail populations. Integrative and Comparative Biology. 60: 275-87. DOI: https://doi.org/10.1093/icb/icaa066 PDF

15. Forsythe ES¹, Sharbrough J¹, Havird JC, Warren JW, Sloan DB. 2019. CyMIRA: the Cytonuclear Molecular Interactions Reference for Arabidopsis. Genome Biology and Evolution. 11: 2194-2202 DOI: https://doi.org/10.1093/gbe/evz144 [1 – Authors contributed equally to this work.] PDF

16. Sharbrough J^†, Luse M^*, Boore JL, Logsdon Jr JM, Neiman M. 2018. Radical amino acid mutations persist longer in the absence of sex. Evolution. 72: 808-824. DOI: https://doi.org/10.1111/evo.13465 PDF

17. Sloan DB, Broz AK, Sharbrough J, Wu Z. 2018. Detecting rare mutations and DNA damage with sequencing-based methods. Trends in Biotechnology. 36: 729-740. DOI: https://doi.org/10.1016/j.tibtech.2018.02.009 PDF

18. Sloan DB, Wu Z, Sharbrough J. 2018. Correction of persistent errors in Arabidopsis Col-0 reference mitochondrial genome sequence. The Plant Cell. 30: 525-527. DOI: https://doi.org/10.1105/tpc.18.00024 PDF

19. Sharbrough J¹, Havird JC¹, Noe GR, Warren JW, Sloan DB. 2017. The mitonuclear dimension of Neanderthal and Denisovan ancestry in modern human genomes. Genome Biology and Evolution. 9: 1567-1581. DOI: https://doi.org/10.1093/gbe/evx114 [1 – Authors contributed equally to this work.] PDF

20. Sharbrough J^†, Cruise JL, Beetch M, Enright NM^*, Neiman M. 2017. Genetic variation for mitochondrial function in the New Zealand freshwater snail Potamopyrgus antipodarum. Journal of Heredity. 108: 759-768. DOI: https://doi.org/10.1093/jhered/esx041 [** – Featured cover article.] PDF

21. Sharbrough J^†, Conover JL, Tate JA, Wendel JF, Sloan DB. 2017. Cytonuclear responses to genome doubling. American Journal of Botany. 104: 1277-1280. DOI: https://doi.org/10.3732/ajb.1700293 PDF

22. McElroy KE, Denton RD, Sharbrough J, Bankers L, Neiman M, Gibbs HL. 2017. Genome expression balance in a triploid trihybrid vertebrate. Genome Biology and Evolution. 9: 968-980. DOI: https://doi.org/10.1093/gbe/evx059 PDF

23. Sloan DB, Havird JC, Sharbrough J. 2017. The on-again, off-again relationship between mitochondrial genomes and species boundaries. Molecular Ecology. 26: 2212-2236. DOI: https://doi.org/10.1111/mec.13959 PDF

24. Beck EA, Thompson AC, Sharbrough J, Brud E, Llopart A. 2015. Gene flow between Drosophila yakuba and D. santomea in subunit V of cytochrome c oxidase: A potential case of cytonuclear co-introgression. Evolution. 69: 1973-1986. DOI: https://doi.org/10.1111/evo.12718 PDF